PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0077.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 213aa    MW: 23930.8 Da    PI: 8.1988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17117167255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Bostr.26833s0077.1.p 117 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYAAFKLRG 167
                           7********.**********954..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-30116176IPR001471AP2/ERF domain
CDDcd000181.03E-19117175No hitNo description
SuperFamilySSF541712.81E-22117176IPR016177DNA-binding domain
PROSITE profilePS5103224.605117175IPR001471AP2/ERF domain
SMARTSM003809.6E-35117181IPR001471AP2/ERF domain
PfamPF008479.0E-12117167IPR001471AP2/ERF domain
PRINTSPR003673.8E-13118129IPR001471AP2/ERF domain
PRINTSPR003673.8E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904277Biological Processnegative regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSCLQKKSKI KMTTFEESSD LDVIQKHLFE ELMIPDGFIE DFVFDDTAFV SGLWSLEPFN  60
PVPKLEPSSP VLDPDSSVQE FLQMEAESSS SSSSITSPEV ETVSNRKKTK RFEETRHYRG  120
VRRRPWGKFA AEIRDPAKKG SRIWLGTFES DIDAARAYDY AAFKLRGRKA VLNFPLDAGK  180
YDAPVNSCRK RRRSDVPQPQ GTTTSTSSSS SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28116176161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
2188193RKRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122390.0AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankAY0459680.0AY045968.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBankAY0793210.0AY079321.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200967.11e-119ethylene-responsive transcription factor ERF107
SwissprotQ9FKG21e-121EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLA0A078FV131e-117A0A078FV13_BRANA; BnaA09g05710D protein
STRINGAT5G61590.11e-118(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.11e-109ERF family protein